| Title: | Human Gene Annotation Data from 'Ensembl' |
|---|---|
| Description: | Gene information from 'Ensembl' genome builds 'GRCh38.p14' and 'GRCh37.p13' to use with the 'topr' package. The datasets were originally downloaded from <https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz> and <https://ftp.ensembl.org/pub/grch37/current/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz> and converted into the format required by the 'topr' package. See <https://github.com/totajuliusd/topr?tab=readme-ov-file#how-to-use-topr-with-other-species-than-human> to see the required format. |
| Authors: | Thorhildur Juliusdottir [cph, aut, cre] |
| Maintainer: | Thorhildur Juliusdottir <[email protected]> |
| License: | LGPL (>= 3) |
| Version: | 1.0.0 |
| Built: | 2025-03-03 05:03:28 UTC |
| Source: | https://github.com/totajuliusd/enshuman |
Human gene annotation datasets to use with the 'topr' package
The two datasets are:
hg38 Gene information from genome build GRCh38.p14
hg37 Gene information from genome build GRCh37.p13
library(enshuman) head(hg38) head(hg37)library(enshuman) head(hg38) head(hg37)
wget https://ftp.ensembl.org/pub/grch37/current/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz
hg37hg37
A data frame with 55,882 rows and 7 variables:
chromosome
genetic position of gene start
genetic position of gene end
The name of the gene
the biotype of the gene
genetic positions of exon start
genetic position of exon end
wget https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz
hg38hg38
A data frame with 41,016 rows and 7 variables:
chromosome
genetic position of gene start
genetic position of gene end
the name of the gene
the biotype of the gene
genetic positions of exon start
genetic position of exon end