Changes in version 2.0.4 (2026-04-13)                  

  - Fixed an issue in foresttopr() where the first y-axis label could be
    clipped or not displayed.

                 Changes in version 2.0.3 (2026-04-12)                  

  - Added the foresttopr() function.
  - Fixed a ggplot2 deprecation warning by replacing the size aesthetic
    with linewidth.
  - Updated the default topr color palette accessed via
    get_topr_colors().
    The previous palette can still be retrieved using
    get_topr_old_colors().
  - Added support for setting the base color in locuszoom plots.

                 Changes in version 2.0.2 (2024-06-19)                  

  - Parameters added for downsampling/thinning the dataset prior to
    plotting with manhattan
  - Locuszoom plot updated to include variants with missing R2 values
  - vline_color bug fix
  - Improved get_lead_snp functionality
  - The get_sign_and_sugg_loci function added for extracting genome-wide
    significant and suggestive loci
  - The manhattanExtra function added for highlighting genome-wide
    significant and suggestive loci

                 Changes in version 2.0.1 (2024-03-15)                  

  - REF and ALT error message fixed when there are p-values below
    .Machine$double.xmin in the input dataset
  - The limits= argument added in the scale_color_manual ggplot2
    function for it to work as expected with ggplot2 v3.5

                 Changes in version 2.0.0 (2024-02-04)                  

  - topr can now be used with any species
  - argument added to set the color of the diagonal line in qqtopr
  - Argument chr_ticknames, show_all_chrticks, hide_chrticks_from_pos,
    hide_chrticks_to_pos and hide_every_nth_chrtick added to the
    Manhattan function to control x-axis labels
  - The log_trans_p argument was added for input datasets that have
    already been log-transformed
  - Inclusion of chromosomes Y and MT in build hg38

                 Changes in version 1.1.10 (2023-09-13)                 

  - Argument get_chr_lengths_from_data added to the Manhattan function
    so the number of chromosomes and chromosome lengths can be extracted
    from the input data.
  - The Manhattan plot displays as many chromosomes as are in the input
    data.

                 Changes in version 1.1.9 (2023-09-06)                  

  - Correct gene annotation used in regionplot when using build 37
  - Fix of partly incorrect coloring of association points near the end
    or beginning of a chromosome.

                 Changes in version 1.1.8 (2023-08-26)                  

  - Missing shade added for chr22 on Manhattan plot when chrX is not
    included in the dataset.

                 Changes in version 1.1.7 (2023-05-23)                  

  - Placeholder added when there are no genes in the region on display
  - Fix for the manhattan function to handle one chromosome datasets
  - xaxis_label added as an input argument to the manhattan plot
    function

                 Changes in version 1.1.6 (2023-04-26)                  

  - Updated documentation

                 Changes in version 1.1.5 (2023-04-25)                  

  - Fix for chrX when displaying genes in regionplot

                 Changes in version 1.1.4 (2023-03-09)                  

  - Default significance threshold changed from 5e-9 to 5e-8
  - Updated README

                 Changes in version 1.1.3 (2023-02-12)                  

  - Fix to make topr compatible with the next version of dplyr

                 Changes in version 1.1.2 (2023-01-13)                  

  - the scale parameter for annotate_with_vline was fixed
  - the Manhattan plot was changed to the more conventional two-color
    display
  - the argument theme_grey can be set to TRUE to make the Manhattan
    plot look like it does in older versions of topr

                 Changes in version 1.1.1 (2022-11-04)                  

  - Minor bug fix for plot colors and legends when plotting multiple
    datasets
  - region argument added to the manhattan function

                 Changes in version 1.1.0 (2022-10-25)                  

  - Update to increase control over plot aesthetics and variant labeling
  - minor bug fixes
  - Includes the option to choose between genome builds 38 (GRCh38.p13)
    and 37 (GRCh37.p13).

                 Changes in version 1.0.0 (2022-01-12)                  

  - First official release of topr

                        Changes in version 0.0.1                        

  - First version including locuszoom plot

                        Changes in version 0.0.0                        

  - First version submitted to github