R-universe - totajuliusd (totajuliusd)

topr - Create Custom Plots for Viewing Genetic Association Results

A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.

Last updated

6.82 score 74 stars 89 scripts 748 downloads

enshuman - Human Gene Annotation Data from 'Ensembl'

Gene information from 'Ensembl' genome builds 'GRCh38.p14' and 'GRCh37.p13' to use with the 'topr' package. The datasets were originally downloaded from <https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz> and <https://ftp.ensembl.org/pub/grch37/current/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz> and converted into the format required by the 'topr' package. See <https://github.com/totajuliusd/topr?tab=readme-ov-file#how-to-use-topr-with-other-species-than-human> to see the required format.

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3.18 score 1 dependents 3 scripts 255 downloads

toprdata - Gene and Exon Data from Ensembl

Gene and exon information from Ensembl genome builds GRCh38.p13 (104) and GRCh37 (v40) to use with the 'topr' package.

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1.00 score 4 scripts 196 downloads