topr - Create Custom Plots for Viewing Genetic Association Results
A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
Last updated 4 months ago
6.47 score 55 stars 30 scripts 772 downloadsenshuman - Human Gene Annotation Data from 'Ensembl'
Gene information from 'Ensembl' genome builds 'GRCh38.p14' and 'GRCh37.p13' to use with the 'topr' package. The datasets were originally downloaded from <https://ftp.ensembl.org/pub/current/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz> and <https://ftp.ensembl.org/pub/grch37/current/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz> and converted into the format required by the 'topr' package. See <https://github.com/totajuliusd/topr?tab=readme-ov-file#how-to-use-topr-with-other-species-than-human> to see the required format.
Last updated 1 years ago
3.18 score 1 dependents 1 scripts 376 downloadstoprdata - Gene and Exon Data from Ensembl
Gene and exon information from Ensembl genome builds GRCh38.p13 (104) and GRCh37 (v40) to use with the 'topr' package.
Last updated 2 years ago
1.00 score 3 scripts 186 downloads